resampling: Check if all the list object have the same order of pathway...

In cavei/MOSClip: Multi Omics Survival Clip

Description

For internal use only

For internal use only

For internal use only

For internal use only

For internal use only

Usage

checkOrder(li)

resolveAndOrder(li)

mergeCol(li, col = "PC1", resolve = FALSE)

filterExpr(exp, samples)

filterMultiOmicsForSamples(MO, samples)

resampling(fullMultiOmics, survAnnot, pathdb, nperm = 100,
  pathwaySubset = NULL, nPatients = 3)

Arguments

li	a list of summaries
col	the column to merge
resolve	weather to resolve the issues
exp	a matrix
samples	the vector of samples to select
MO	a multiOmic object
fullMultiOmics	a multiOmic object
survAnnot	survival annotation
pathdb	pathway dayabase
nperm	number of permutation
pathwaySubset	a list of pathways to resample
nPatients	number of patients to remove for resampling

Value

a matrix

a filtered matrix

a filtered MultiOmics objects

list of the resampling tables of results

cavei/MOSClip documentation built on May 12, 2019, 5:22 p.m.