Given the pathway and the module, it creates the heatmaps of the mostly involved genes for each omic.
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pathway |
MultiOmicsModule pathway object |
moduleNumber |
a module number |
sortBy |
a covariate to sort by |
fileName |
optional filenames to save the plot |
paletteNames |
three palettes |
additionalAnnotations |
optional additional sample annotations |
additionalPaletteNames |
optional additional colors for annotations |
withSampleNames |
create also the samples names |
fontsize_row |
size of the fonts for rows |
fontsize_col |
like fontsize_row but for columns |
nrowsHeatmaps |
magnification respect to annotation of sample (annotations take 1 row) |
h |
the height of the plot |
w |
the width of the plot |
discr_prop_pca |
the minimal proportion to compute the pca classes |
discr_prop_events |
the minimal proportion to compute the event classes |
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