Given a matrix it summarize to a 0 or 1
1 2 | summarizeWithPca(data, features, name = "pca", shrink = FALSE,
method = "regular", cliques = NULL, maxPCs = 3, loadThr = 0.6)
|
data |
a data matrix |
features |
a vector with the features to analyze |
name |
prefix of the covariates |
shrink |
shirnk or not the covariance matrix. |
method |
either "regular", "sparse" or "topological" |
cliques |
the features organized in cliques. Only use for topology. |
maxPCs |
maximum number of pcs to consider |
loadThr |
loading threshold |
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