extractSummaryFromPCA: Extract Summary PCA from MultiOmics Objects

In cavei/MOSClip: Multi Omics Survival Clip

Description

Given an omic summarized by "summarizeToBinaryEvents" extract the most important features.

Usage

extractSummaryFromPCA(omic, moduleCox, loadThr = 0.6, atleast = 1,
  minprop = 0.1)

Arguments

omic	a summarized omic
moduleCox	the coxObj of the interesting module
loadThr	the thr value to select the most influent features according to the loading
atleast	the minimum number of gene to retrieve
minprop	the minimal proportion of cutp

Value

summary for omic summarized using clusters

sigModule	the original data for significant features
discrete	the discrete version of the significant covariates converted (when needed) into the discrete version
subset	data.frame(row.names=names(topGenes), metClust=topGenes)
covsConsidered	the name of the considered omic

cavei/MOSClip documentation built on May 12, 2019, 5:22 p.m.