plotModuleInGraph: Plot graph of the module by omics

In cavei/MOSClip: Multi Omics Survival Clip

Description

Given the pathway, it creates the Kaplan-meier curves following the formula.

Usage

plotModuleInGraph(pathway, moduleNumber, orgDbi = "org.Hs.eg.db",
  paletteNames = NULL, legendLabels = NULL, fileName = NULL,
  discr_prop_pca = 0.15, discr_prop_events = 0.05)

Arguments

pathway	MultiOmicsModule pathway object
moduleNumber	a module number
orgDbi	if needed, a organism Dbi to translate vectors
paletteNames	named vector of MOpalettes, names replace makeLegend arguments
legendLabels	set up your favourite names for the omics
fileName	optional filenames to save the plot
discr_prop_pca	the minimal proportion to compute the pca classes
discr_prop_events	the minimal proportion to compute the event classes

cavei/MOSClip documentation built on May 12, 2019, 5:22 p.m.