Description Usage Arguments Value
Select stable pathway modules
Count the resampling success
Add resampling counts to module summary
1 2 3 4 5 6 7 | selectStablePathwaysModules(perms, moduleSummary, success = 90,
col = "pvalue")
getPathwaysModulesSuccess(perms, moduleSummary, col = "pvalue",
thr = 0.05)
addResamplingCounts(moduleSummary, resamplingCounts)
|
perms |
a list of perm objects |
moduleSummary |
summary of the modules |
success |
number of success |
col |
the name of the column |
thr |
the threshold for significance |
resamplingCounts |
the counts of success |
the subset of stable modules
the counts of success
a module summary with reampling counts
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