evaluateResampling: Select stable pathway modules
In cavei/MOSClip: Multi Omics Survival Clip
Description
Usage
Arguments
Value
Description
Select stable pathway modules
Count the resampling success
Add resampling counts to module summary
Usage
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selectStablePathwaysModules(perms, moduleSummary, success = 90,
col = "pvalue")
getPathwaysModulesSuccess(perms, moduleSummary, col = "pvalue",
thr = 0.05)
addResamplingCounts(moduleSummary, resamplingCounts)
Arguments
perms
a list of perm objects
moduleSummary
summary of the modules
success
number of success
col
the name of the column
thr
the threshold for significance
resamplingCounts
the counts of success
Value
the subset of stable modules
the counts of success
a module summary with reampling counts
cavei/MOSClip documentation built on May 12, 2019, 5:22 p.m.
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Description Usage Arguments Value
Description
Select stable pathway modules
Count the resampling success
Add resampling counts to module summary
Usage
1 2 3 4 5 6 7 | selectStablePathwaysModules(perms, moduleSummary, success = 90,
col = "pvalue")
getPathwaysModulesSuccess(perms, moduleSummary, col = "pvalue",
thr = 0.05)
addResamplingCounts(moduleSummary, resamplingCounts)
|
Arguments
perms |
a list of perm objects |
moduleSummary |
summary of the modules |
success |
number of success |
col |
the name of the column |
thr |
the threshold for significance |
resamplingCounts |
the counts of success |
Value
the subset of stable modules
the counts of success
a module summary with reampling counts
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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