dummy_datasets: Function to create some fake dataset for testing purpose

In cavei/MOSClip: Multi Omics Survival Clip

Description

Create a dataset with 200 patients and 5 genes: 3 genes contains 150/50 ratio difference with mean obtained with runif (n1 , 0, 0.2) / runif(n2, 0.7, 0.99) 2 genes 75/125 ratio difference in the opposite direction obtained with runif (n3 , 0.6, 1) / runif(n4, 0.2, 0.4)

Create a dataset with 200 patients and 1 genes: generated by 191 0.3 and 9 0.4

Create a dataset with 200 patients and 5 genes: 3 genes contains 150/50 ratio difference with mean obtained with rnorm (n1 , 5, 1) / rnorm(n2, 8, 1) 2 genes 75/125 ratio difference in the opposite direction obtained with rnorm (n3 , 9, 1) / rnorm(n4, 2, 0.4)

Create a dataset with 200 patients and 5 genes: 3 genes contains 150/50 ratio difference with values obtained by sampling c(-1,0,0,0,1,1) and c(-2,0,0,0,0,2,2) for low/high 2 genes 75/125 ratio difference in the opposite direction obtained by sampling c(-2,0,0,0,0,0,2) and c(-1,0,0,0,0,0,1) for high/low

Usage

dummy_methylation_like_dataset(seed = 1234)

dummy_methylation_like_flat_dataset(seed = 1234)

create_met_cluster_dict(dataset)

dummy_expression_like_dataset(seed = 1234)

dummy_cnv_like_dataset(seed = 1234)

Arguments

seed	the seed number for reproducibility of random numbers
dataset	a dummy dataset for the dummy dict

Value

dataset

dict

cavei/MOSClip documentation built on May 12, 2019, 5:22 p.m.