Files in cavei/MOSClip
Multi Omics Survival Clip
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/MOMSurvTest.R
R/MultiOmic-classes.R
R/OmicsAggregator-class.R
R/createLayout.R
R/createTabularReports.R
R/cyGraphModification.R
R/data.R
R/downstream-analysis-functions.R
R/dummy-datasets-creator.R
R/extractAndCreateGrobs.R
R/extractSummary.R
R/getRiskTable.R
R/guessInvolvement.R
R/method-convertPathway.R
R/multiOmicMethods.R
R/multiOmicsSurvivalTests.R
R/plottingMO.R
R/resamplingFunction.R
R/supertest.R
R/utility-functions.R
README.md
_config.yml
man/MultiOmicsModules-class.Rd
man/MultiOmicsPathway-class.Rd
man/Omics-class.Rd
man/annotePathwayToFather.Rd
man/availableOmicMethods.Rd
man/computeOmicsIntersections.Rd
man/discreteClasses.Rd
man/dummy_datasets.Rd
man/evaluateResampling.Rd
man/extractBadPrognosisProfile.Rd
man/extractRiskTable.Rd
man/extractSummaryFromBinary.Rd
man/extractSummaryFromCluster.Rd
man/extractSummaryFromNumberOfEvents.Rd
man/extractSummaryFromPCA.Rd
man/guessInvolvement.Rd
man/guessInvolvementPathway.Rd
man/match_pathway_to_fathers.Rd
man/multiOmicsModuleInterAnalysis.Rd
man/multiOmicsSurvivalModuleTest.Rd
man/multiOmicsSurvivalPathwayTest.Rd
man/multiPathwayModuleReport.Rd
man/multiPathwayReport.Rd
man/plotGraphiteInCy.Rd
man/plotModuleHeat.Rd
man/plotModuleInGraph.Rd
man/plotModuleKM.Rd
man/plotModuleReport.Rd
man/plotMultiPathwayReport.Rd
man/plotPathwayHeat.Rd
man/plotPathwayKM.Rd
man/plotSurvivalBarcodes.Rd
man/pvalueSummary.Rd
man/resampling.Rd
man/resamplingPathway.Rd
man/runSupertest.Rd
man/showMOSpalette.Rd
man/strip-functions.Rd
man/stripModulesFromPathways.Rd
man/summarizeColumnsByMask.Rd
man/summarizeInCluster.Rd
man/summarizeInClusterWithoutDictionary.Rd
man/summarizeToBinaryDirectionalEvents.Rd
man/summarizeToBinaryEvents.Rd
man/summarizeToNumberOfDirectionalEvents.Rd
man/summarizeToNumberOfEvents.Rd
man/summarizeWithPca.Rd
tests/testthat.R
tests/testthat/test-extract-summary.R
tests/testthat/test-general-utilities.R
tests/testthat/test-multiOmicMethods.R
tests/testthat/test-supertest.R
