calculateCutTimeForGrowthCurve: calculateCutTimeForGrowthCurve

In chapmandu2/IncucyteDRC: Dose Response Curves from Incucyte Proliferation Assays

Description

For a given growth curve model, calculates the appropriate cut time for a specific number of doublings

Usage

calculateCutTimeForGrowthCurve(gcm, baseline_time = 24, no_doublings = 4,
  max_val = 80)

Arguments

gcm	Growth curve model
baseline_time	The timepoint which forms the baseline for calculting number of doublings
no_doublings	The number of doublings required
max_val	The maximum allowable growth curve value

Value

list object containing a single row data frame with the results and a plotted representation

Examples

pm_file <- system.file(file='extdata/example.PlateMap', package='IncucyteDRC')
test_pm <- importPlatemapXML(pm_file)
data_file <- system.file(file='extdata/example_data.txt', package='IncucyteDRC')
test_data <- importIncucyteData(data_file, metric='pc')

test_list <- splitIncucyteDRCPlateData(test_pm, test_data, group_columns='growthcondition')

print(test_list)

test_idrc_set <- fitGrowthCurvesGrouped(test_list[[2]])
plotIncucyteDRCSet(test_idrc_set, grouped=TRUE)
test_idrc_set$fitted_models_grouped
test_gcm <- test_idrc_set$fitted_models_grouped$gc_model[[1]]
test_gcm
calculateCutTimeForGrowthCurve(test_gcm, baseline_time=24, no_doublings=4, max_val=80)

chapmandu2/IncucyteDRC documentation built on May 13, 2019, 3:28 p.m.