plotDoseResponseCurve: plotDoseResponseCurve

In chapmandu2/IncucyteDRC: Dose Response Curves from Incucyte Proliferation Assays

Description

Plots the dose response curve for a given sample id from an IncucyteDRCSet object

Usage

plotDoseResponseCurve(idrc_set, sampleid, native = FALSE)

Arguments

idrc_set	IncucyteDRCSet object
sampleid	The sample id to plot
native	deprecated

Value

a ggplot2 object (if native is FALSE) or NULL but draws to open graphics object (if native is TRUE)

Examples

pm_file <- system.file(file='extdata/example.PlateMap', package='IncucyteDRC')
test_pm <- importPlatemapXML(pm_file)
data_file <- system.file(file='extdata/example_data.txt', package='IncucyteDRC')
test_data <- importIncucyteData(data_file, metric='pc')

test_list <- splitIncucyteDRCPlateData(test_pm, test_data, group_columns='growthcondition')

print(test_list)

test_idrc_set <- fitGrowthCurvesGrouped(test_list[[2]])
test_idrc_set <- fitGrowthCurvesIndividual(test_idrc_set)
test_idrc_set <- calculateDRCData(test_idrc_set, cut_time=100)
test_idrc_set <- fitDoseResponseCurve(test_idrc_set)
test_idrc_set <- calculateEC50(test_idrc_set)
plotDoseResponseCurve(test_idrc_set, 'PDD00017273', native=FALSE)

chapmandu2/IncucyteDRC documentation built on May 13, 2019, 3:28 p.m.