importPlatemapXML: importPlatemapXML

In chapmandu2/IncucyteDRC: Dose Response Curves from Incucyte Proliferation Assays

Description

Imports .Platemap XML files from Incucyte Zoom software and extracts information in the Compound, GrowthCondition and CellType fields.

Usage

importPlatemapXML(filepath, control_cpd = "DMSO")

Arguments

filepath	Path to a .Platemap XML file generated by the Incucyte Zoom software
control_cpd	Specify the compound to use as baseline. Defaults to DMSO

Value

data frame

Examples

#example data 1
pm_file <- system.file(file='extdata/example.PlateMap', package='IncucyteDRC')
test_pm <- importPlatemapXML(pm_file)
head(test_pm)

#example data 2
pm_file2 <- system.file(file='extdata/example2.PlateMap', package='IncucyteDRC')
test_pm2 <- importPlatemapXML(pm_file2)
head(test_pm2)

chapmandu2/IncucyteDRC documentation built on May 13, 2019, 3:28 p.m.