exportEC50Data: exportEC50Data

In chapmandu2/IncucyteDRC: Dose Response Curves from Incucyte Proliferation Assays

Description

Exports EC50 data into a standard data frame format from the dose response fit for an IncucyteDRCSet object

Usage

exportEC50Data(idrc_set, add_metadata = FALSE)

Arguments

idrc_set	IncucyteDRCSet object
add_metadata	Whether or not to merge IncucyteDRCSet metadata into the output

Value

IncucyteDRCSet object

Examples

pm_file <- system.file(file='extdata/example.PlateMap', package='IncucyteDRC')
test_pm <- importPlatemapXML(pm_file)
data_file <- system.file(file='extdata/example_data.txt', package='IncucyteDRC')
test_data <- importIncucyteData(data_file, metric='pc')

test_list <- splitIncucyteDRCPlateData(test_pm, test_data, group_columns='growthcondition')

print(test_list)

test_idrc_set <- fitGrowthCurvesGrouped(test_list[[2]])
test_idrc_set <- fitGrowthCurvesIndividual(test_idrc_set)
test_idrc_set <- calculateDRCData(test_idrc_set, cut_time=100)
test_idrc_set <- fitDoseResponseCurve(test_idrc_set)
test_idrc_set <- calculateEC50(test_idrc_set)
exportEC50Data(test_idrc_set)

chapmandu2/IncucyteDRC documentation built on May 13, 2019, 3:28 p.m.