exportDRCDataToDotmatics: exportDRCDataToDotmatics

In chapmandu2/IncucyteDRC: Dose Response Curves from Incucyte Proliferation Assays

Description

Exports data in Dotmatics format for an IncucyteDRCSet or IncucyteDRCSetList object that represents a full plate of data. The platemap must be provided as an IncucyteDRCPlatemap object and should correspond to the data contained in the IncucyteDRCSet or IncucyteDRCSetList object.

Usage

exportDRCDataToDotmatics(idrc_set_list, platemap)

Arguments

idrc_set_list	IncucyteDRCSetList object
platemap	IncucyteDRCPlatemap object from importPlatemap or importPlatemapXML

Value

list object with samplelist and data elements

Examples

pm_file <- system.file(file='extdata/example.PlateMap', package='IncucyteDRC')
test_pm <- importPlatemapXML(pm_file)
data_file <- system.file(file='extdata/example_data.txt', package='IncucyteDRC')
test_data <- importIncucyteData(data_file, metric='pc')

test_drc <- splitIncucyteDRCPlateData(test_pm, test_data, group_columns='growthcondition')
test_drc <- lapply(test_drc, fitGrowthCurvesIndividual)
test_drc <- lapply(test_drc, fitGrowthCurvesGrouped)
test_drc <- lapply(test_drc, calculateDRCData, cut_time=100)
print(test_drc)
print(test_drc[[2]])
exportDRCDataToDotmatics(test_drc, test_pm)
exportDRCDataToDotmatics(test_drc[[2]], test_pm)

chapmandu2/IncucyteDRC documentation built on May 13, 2019, 3:28 p.m.