fitDoseResponseCurve: fitDoseResponseCurve

In chapmandu2/IncucyteDRC: Dose Response Curves from Incucyte Proliferation Assays

Description

Fits the dose response curve using drc for an IncucyteDRCSet object

Usage

fitDoseResponseCurve(idrc_set, include_control = FALSE)

Arguments

idrc_set	IncucyteDRCSet object
include_control	Whether to include control sample as zero conc control

Value

IncucyteDRCSet object

Examples

pm_file <- system.file(file='extdata/example.PlateMap', package='IncucyteDRC')
test_pm <- importPlatemapXML(pm_file)
data_file <- system.file(file='extdata/example_data.txt', package='IncucyteDRC')
test_data <- importIncucyteData(data_file, metric='pc')

test_list <- splitIncucyteDRCPlateData(test_pm, test_data, group_columns='growthcondition')

print(test_list)

test_idrc_set <- fitGrowthCurvesGrouped(test_list[[2]])
test_idrc_set <- fitGrowthCurvesIndividual(test_idrc_set)
test_idrc_set <- calculateDRCData(test_idrc_set, cut_time=100)
test_idrc_set <- fitDoseResponseCurve(test_idrc_set)
test_idrc_set <- calculateEC50(test_idrc_set)
exportEC50Data(test_idrc_set)

chapmandu2/IncucyteDRC documentation built on May 13, 2019, 3:28 p.m.