Files in chenweng1991/EZsinglecell
.Rbuildignore
.gitignore
DESCRIPTION
EZsinglecell.Rproj
Example.md
NAMESPACE
R/Clustering.R
R/DE.R
R/Fullplot_v2.R
R/GSEA.R
R/General.R
R/Gettopgenes.R
R/GettsnesignatureSuper.R
R/RePACT.R
R/TreCCAtree.R
R/bubbleplot.R
README.md
S5.tmp.pdf
S7.rock.endo.EC.p.pdf
copyrawdata.sh
data-raw/BInomial.tier1
data-raw/BInomial.tier2
data-raw/Beta.BMI.trj.genes.csv
data-raw/Beta.T2D.trj.genes.csv
data-raw/GWAS2717.geneinformation
data-raw/HUMAN_mono_motifs.csv
data-raw/Homo_sapiens_TF.txt
data-raw/Preparedata.md
data-raw/RBPDB_v1.3.1_proteins_human_2012-11-21.csv
data-raw/Surfaceome.data.csv
data-raw/all.Beta.maker.RDS
data-raw/allAlpha.marker
data-raw/briefGene.table
data-raw/cellcycle.csv
data-raw/data.cnsis.report
data-raw/delta.markers
data-raw/epsilon.markers
data-raw/ht.tf.ass
data-raw/interactions.tsv
data-raw/msigdb.v5.2.symbols.gmt
data-raw/pp.markers
data/Beta.BMI.trj.genes.rda
data/Beta.T2D.trj.genes.rda
data/Crisp.t1.rda
data/Crisp.t2.rda
data/G1.S.rda
data/G2.M.rda
data/GWASdata.rda
data/Hocomocogenes.rda
data/M.G1.rda
data/M.rda
data/S.rda
data/Surfaceome.data.rda
data/TFfromDBD.rda
data/TFvector.rda
data/all.Beta.maker.rda
data/all.cellcycle.rda
data/all.genes.refer.rda
data/allAlpha.marker.rda
data/delta.markers.rda
data/epsilon.markers.rda
data/gene_drug.db.rda
data/msig.db.rda
data/pp.markers.rda
man/DE.gettripple.Rd
man/DOCLEAN.Rd
man/DoDE.Rd
man/Fullplot_v2.Rd
man/Fun.enrich_withFC.Rd
man/Fun.enrich_withFC.pvalue.Rd
man/Generalbubbleplot.Rd
man/GetPCAcelldata_v2.Rd
man/GetPCheat.Rd
man/GetinformativeGene.Rd
man/Gettopgenes.Rd
man/GettsnesignatureSuper.Rd
man/Prep.res.adjust.Rd
man/Prepareforpseudoregress.g.Rd
man/Primaryclutering.Rd
man/Refine.relationship.Rd
man/Second.primary.adjust.Rd
man/Tjct.core.gen.Rd
man/Tjct.core.plot.Rd
man/Tomerge.Rd
man/Tomerge.col.Rd
man/Tomerge_v2.Rd
man/Toplot3Dtjct.Rd
man/Tree.build.1.Rd
man/Tree.build.2nd.clustering.Rd
man/Tree.build.2nd.clustering.patch.Rd
man/Tree.build.2nd.treemaking.Rd
man/Tree.build.prepare.Rd
man/binomialtest.msig.enrch_deplet.Rd
man/bubblePrep.Rd
man/datapair.mk.Rd
man/dgepreprocess.Rd
man/dist.matrix.prep.Rd
man/dist.matrix.prep.v3.Rd
man/docluster.Rd
man/docluster.multi.Rd
man/format2.Rd
man/myddply.center.Rd
man/myddply.center.v2.Rd
man/mydplyr.percentage.Rd
man/tree.plot.v2.Rd
test.data/Example.dge.txt.gz
test.data/N706_Stage6.obj
tmp.pdf
