Primaryclutering: Primaryclutering

In chenweng1991/EZsinglecell:

Description

This function is an advanced clustering function that when for example input dgeA, dgeB. This will do cluster individually for A, B and also for merged AB

Usage

Primaryclutering(rawdatapackage, txcut = 500, RAWinput = T,
  cluster.resos = c(0.6, 0.6), allsamereso = F, together.reso = 0.6)

Arguments

rawdatapackage	a list of several dge files. At least 2 dge. in the case of TreCCA tree. It is alwasy two dge, one from early time, one form latert
txcut	The transcripts cutoff for clustering analysis
RAWinput	If true, it is a raw dge
cluster.resos	A vector of number, each is the cluster resolution for each dge.
allsamereso	If true, then take the first number of cluster.resos for clustering of all dges
Together.reso	The resolution of merged dge(all samples together)

Value

This will return a list of seurat result. It is used in function such as Tree.build.prepare

Examples

Primaryclutering(dgelist,txcut=500,cluster.resos=first.reso,RAWinput=israw)

chenweng1991/EZsinglecell documentation built on July 11, 2020, 3:23 p.m.