docluster.multi: docluster.multi

In chenweng1991/EZsinglecell:

Description

This function is to do clustering analysis for a number of sets combined

Usage

docluster.multi(Number, txcutoff = 500, sets, nms, selected = NULL,
  filterstuff = NULL, reso = 0.6, israw = F, dofindcluster = T,
  dotsne = T, acphi = 2500)

Arguments

Number	the number of informative genes for clustering, default is 500
txcutoff	the informative gene list from GetinformativeGene, default is 500
sets	a list of dge filesw
nms	a vector of names for each sample
selected	NULL
filterstuff	NULL
reso	The resolusion for clustering, default is 0.6
israw,	the dge in sets is from raw raw data that has no rowname if TRUE, or if FALSE it is extracted raw matrix from Seurat object
dofindcluster	if TRUE, do find clustering, default is true
dotsne	if TRUE, do tsne, default is true
acphi	accepted hiest gene number per cell, default is 2500(Should increase when processing fludigam data)

Value

this will return the clean and square plot

Examples

S7rock_1.S7<-docluster.multi(500,txcutoff=500,sets=list(s7.RockII_1=s7.RockII_1.dge,s7.B=s7.B.dge),nms=c("s7.RockII_1","s7.B"),israw=T)

chenweng1991/EZsinglecell documentation built on July 11, 2020, 3:23 p.m.