Tjct.core.gen: Tjct.core.gen
In chenweng1991/EZsinglecell:
Description
Usage
Arguments
Value
Examples
Description
This function is to compute significant trajectory genes by linear regression
Usage
1
Tjct.core.gen(object = NULL, binnumber = 20, qcut = 0.05)
Arguments
object
The seurat object for Repact study
binnumber
Number of bins to divide the whole trajectory, default is 20. This caqn vary upon total cell numbers available
qcut
q value cutoff to be used ti call a trajectory gene hits.
Value
A list of upregulated and downregulated trajectory genes.
Examples
1
T2D.tjct.2nd.ob<-Tjct.core.gen(T2D.tjct.ob)
chenweng1991/EZsinglecell documentation built on July 11, 2020, 3:23 p.m.
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Description Usage Arguments Value Examples
Description
This function is to compute significant trajectory genes by linear regression
Usage
1 | Tjct.core.gen(object = NULL, binnumber = 20, qcut = 0.05)
|
Arguments
object |
The seurat object for Repact study |
binnumber |
Number of bins to divide the whole trajectory, default is 20. This caqn vary upon total cell numbers available |
qcut |
q value cutoff to be used ti call a trajectory gene hits. |
Value
A list of upregulated and downregulated trajectory genes.
Examples
1 | T2D.tjct.2nd.ob<-Tjct.core.gen(T2D.tjct.ob)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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