Description Usage Arguments Value Examples
This function did seurat primary clustering for the second layer, which is higher resolution . Input\ tree.prep,tree.1.ob, which is the output from Tree.build.1; thesecondary resolution for clustering. ### Output\ primaries.deeper.lst which is a list primary objects, including multiple pairs of connections.
1 2 | Tree.build.2nd.clustering(tree.prep, tree.1.ob, second.reso = c(0.3,
0.3))
|
tree.prep |
This is an object generated from Tree.build.prepare or Prep.res.adjust. This is basically the clustering result. |
tree.1.ob |
This is an object generated from Tree.build.1. This is the low resulotion subtree |
second.reso |
This is the resolution for the high resolution. For example, c(0.3,0.3) |
This will return the secondary clustering result. It will be used for Tree.build.2nd.clustering.patch and Tree.build.2nd.treemaking
1 | S4_S5ROCK.tree.2nd.primary_0.3_0.3.list<-Tree.build.2nd.clustering(S4_S5ROCK.tree.prep,S4_S5ROCK.tree.1.ob,second.reso=c(0.3,0.3))
|
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