Tree.build.2nd.clustering: Tree.build.2nd.clustering

In chenweng1991/EZsinglecell:

Description

This function did seurat primary clustering for the second layer, which is higher resolution . Input\ tree.prep,tree.1.ob, which is the output from Tree.build.1; thesecondary resolution for clustering. ### Output\ primaries.deeper.lst which is a list primary objects, including multiple pairs of connections.

Usage

Tree.build.2nd.clustering(tree.prep, tree.1.ob, second.reso = c(0.3,
  0.3))

Arguments

tree.prep	This is an object generated from Tree.build.prepare or Prep.res.adjust. This is basically the clustering result.
tree.1.ob	This is an object generated from Tree.build.1. This is the low resulotion subtree
second.reso	This is the resolution for the high resolution. For example, c(0.3,0.3)

Value

This will return the secondary clustering result. It will be used for Tree.build.2nd.clustering.patch and Tree.build.2nd.treemaking

Examples

S4_S5ROCK.tree.2nd.primary_0.3_0.3.list<-Tree.build.2nd.clustering(S4_S5ROCK.tree.prep,S4_S5ROCK.tree.1.ob,second.reso=c(0.3,0.3))

chenweng1991/EZsinglecell documentation built on July 11, 2020, 3:23 p.m.