Tree.build.2nd.clustering.patch: Tree.build.2nd.clustering.patch

In chenweng1991/EZsinglecell:

Description

Introduction\ This function is to address single dog problem. It will Identify and do seurat clustering for the single dog & dog+neighbours. ### Input\ the clustered result from Tree.build.2nd.clustering as well as tree.prep and tree.1.ob. singledog.reso should be specified. ### Output\ If there was no single dog, the out put is exactly the same as imput, otherwise, two seurat object would be added at the end, forming a list as whole

Usage

Tree.build.2nd.clustering.patch(primaries.deeper.lst, tree.prep, tree.1.ob,
  singledog.reso = 0.3)

Arguments

primaries.deeper.lst	This is generated by Tree.build.2nd.clustering and Second.primary.adjust
tree.prep	This is the low resolution clustering result from Tree.build.prepare
tree.1.ob	This is the low reslution subtree result from Tree.build.1
singledog.reso	This is the resolution singledog cluster for 0.3

Value

This will return the high resolution result with a pach that consider the single dog. This is going to be used for Tree.build.2nd.treemaking

Examples

S4_S5ROCK.tree.2nd.primary_0.3_0.3.list<-Tree.build.2nd.clustering(S4_S5ROCK.tree.prep,S4_S5ROCK.tree.1.ob,second.reso=c(0.3,0.3))

chenweng1991/EZsinglecell documentation built on July 11, 2020, 3:23 p.m.