Generalbubbleplot: Generalbubbleplot

In chenweng1991/EZsinglecell:

Description

This function is to make bubbleplot out of a data pair. Notice, genelist is a dataframe that contain a column that is gene name, where the column name is "gene", if fa facet plot is wanted , an extra column named "tag" is required

Usage

Generalbubbleplot(pair.data = NULL, cpcol = "celltype2",
  toskip = NULL, genelist = NULL, hlen = 30, llen = 25,
  midlen = 0, limlen = 30, showcmcol = F, titlename = "",
  angl = 0, donormalscale = F, doreturn = F, usefacet = F)

Arguments

pair.data	the data pair that was prepred by datapair.mk
cpcol	The column name for comparison, the default is name
toskip	A vector of variables from col(eg, a cell type), that I don't want to show in bubble plot
genelist	A vector of genes that are interesting
hlen	The high color span length, default is 30
llen	The low color span length, default is 25
midlen	The middle color span length, default is 0
limlen	The extreme high or low color span length
showcmcol	If true, print out a couple of lines of compared column
titlename	The figure title
angl	The angle of x axis that I want it to rotate
donormalscale	If true, further normalize to zero for all genes
doreturn	If true, reurn a list including bubble data and bubble plot
usefacet	If true, plot with facet, an extra column in genelist is required

Value

return data pair that can be used for DE, bubble plot and others.

Examples

Generalbubbleplot(ROCKvsnorock.non.paired,cpcol="name",genelist=c("TP53","TNFRSF1A","BAK1","CASP1"),donormalscale=F)

chenweng1991/EZsinglecell documentation built on July 11, 2020, 3:23 p.m.