Tree.build.2nd.treemaking: Tree.build.2nd.treemaking

In chenweng1991/EZsinglecell:

Description

Introduction\ Similar with Tree.build.1, this function after getting the clustering primary object for the second layer. this one is literally building the tree and generate plots

Usage

Tree.build.2nd.treemaking(primaries.deeper.lst, second.reso = c(0.3,
  0.3), singledog.reso = 0.06, downstremename = "s1.24",
  upstremename = "s1", relationtext = 2.5, dorefine = T, dir)

Arguments

primaries.deeper.lst	This is the adjusted secondary clustering results from Tree.build.2nd.clustering.patch
second.reso	This should be consistent with what eventually used in secondary clustering, it should follow Second.primary.adjust
singledog.reso	This should follow that in Tree.build.2nd.clustering.patch
downstremename	="s1.24"
upstremename	="s1"
relationtext	=2.5
dorefine	=T
dir	The path of the whole tree generating. keep consistent with Tree.build.prepare

Value

No return

Examples

S4_S5ROCK.tree.2nd.primary_0.3_0.3.list<-Second.primary.adjust(S4_S5ROCK.tree.2nd.primary_0.3_0.3.list,S4_S5ROCK.tree.prep,second.reso.adjust=c(0.3,0.6))

chenweng1991/EZsinglecell documentation built on July 11, 2020, 3:23 p.m.