dgepreprocess: dgepreprocess

In chenweng1991/EZsinglecell:

Description

This function is to preprocess raw dge into a format for clustering analysis, including add rownames and cutoff low expressing cells

Usage

dgepreprocess(isletdge, Txcutoff = 1000, norowname = T)

Arguments

isletdge	The raw dge data
Txcutoff	The UMI cutoff as for defined "cell"
norowname	The input dge file with or without row names? if true, input already has rowname(usually when data taken from other analyzed Seurat object), if FALSE, the input without rowname and ususally is the very raw data

Value

this will return the formated dge for clustering

Examples

dgepreprocess(s7.RockII_1.dge,500,norowname=T)

chenweng1991/EZsinglecell documentation built on July 11, 2020, 3:23 p.m.