dgepreprocess: dgepreprocess

Description Usage Arguments Value Examples

Description

This function is to preprocess raw dge into a format for clustering analysis, including add rownames and cutoff low expressing cells

Usage

1
dgepreprocess(isletdge, Txcutoff = 1000, norowname = T)

Arguments

isletdge

The raw dge data

Txcutoff

The UMI cutoff as for defined "cell"

norowname

The input dge file with or without row names? if true, input already has rowname(usually when data taken from other analyzed Seurat object), if FALSE, the input without rowname and ususally is the very raw data

Value

this will return the formated dge for clustering

Examples

1
dgepreprocess(s7.RockII_1.dge,500,norowname=T)

chenweng1991/EZsinglecell documentation built on June 5, 2019, 11:03 a.m.