Files in cmatKhan/brentlabRnaSeqTools
A Collection of Functions to Interact with the Brentlab RNASeq Database

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DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

R/BamFunctions.R R/DatabaseInteractionFunctions.R R/DeseqFunctions.R R/ExperimentalSetFunctions.R R/IgvFunctions.R R/ModelMatrixFunctions.R R/QualityAssessmentFunctions.R R/RleFunctions.R R/TallyFunctions.R R/Utils.R R/data_documentation.R R/global_variables.R R/graphYeastTimeCourse.R R/misc_and_tmp.R R/processing_pipeline.R R/surrogate_variables.R README.md

Singularity

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codecov.yml

data/database_info.rda

data/grant_df.rda

data/run_numbers_with_leading_zero.rda

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docs/articles/database_interaction.html

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docs/reference/determineLibraryStrandedness.html

docs/reference/edgerLog2cpm.html

docs/reference/examineSingleGroupWithLibDateSizeFactors.html

docs/reference/featureGRanges.html

docs/reference/fltrLowReplicateParams.html

docs/reference/getBamIndexPath.html

docs/reference/getCoverageOverRegion.html

docs/reference/getMetadata.html

docs/reference/getNfCoMultiqcDataPaths.html

docs/reference/getRawCounts.html

docs/reference/getRunNumberLeadingZero.html

docs/reference/getUserAuthToken.html

docs/reference/grant_df.html

docs/reference/graphYeastTimeCourse.html

docs/reference/index.html

docs/reference/isNumeric.html

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docs/reference/listTables.html

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docs/reference/locusLog2Cpm.html

docs/reference/moveNfCoFastqFiles.html

docs/reference/outlierFence.html

docs/reference/parseBroadRnaseqcOutput.html

docs/reference/parseComparatives.html

docs/reference/patchTable.html

docs/reference/plotCoverageOverLocus.html

docs/reference/postCounts.html

docs/reference/postFastqSheet.html

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docs/reference/proteinCodingCount.html

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docs/reference/qcGenotypeAndMarkerCoverage.html

docs/reference/qualityAssessmentFilter.html

docs/reference/readInData.html

docs/reference/removeOneRedoIqr.html

docs/reference/removeParameterEffects.html

docs/reference/rleByReplicateGroup.html

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docs/reference/rlePlotCompareEffectRemoved.html

docs/reference/rlePlot_helper.html

docs/reference/rleSummary.html

docs/reference/runSVA.html

docs/reference/run_numbers_with_leading_zero.html

docs/reference/selectQaColumns.html

docs/reference/strandedScanBamParam.html

docs/reference/testBamPath.html

vignettes/.gitignore

vignettes/create_nextflow_samplesheet.Rmd vignettes/create_set.Rmd vignettes/database_interaction.Rmd vignettes/experiment_sets.Rmd vignettes/genomics_tools.Rmd vignettes/install_nf_co_rnaseq_pipeline.Rmd vignettes/running_the_nextflow_pipeline.Rmd

cmatKhan/brentlabRnaSeqTools documentation built on Nov. 17, 2021, 5:47 a.m.

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cmatKhan/brentlabRnaSeqTools
A Collection of Functions to Interact with the Brentlab RNASeq Database

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A Collection of Functions to Interact with the Brentlab RNASeq Database

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cmatKhan/brentlabRnaSeqTools A Collection of Functions to Interact with the Brentlab RNASeq Database

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cmatKhan/brentlabRnaSeqTools
A Collection of Functions to Interact with the Brentlab RNASeq Database

Files in cmatKhan/brentlabRnaSeqTools
A Collection of Functions to Interact with the Brentlab RNASeq Database