expData-ANY-character-method: expData Get data item from an input 'SingleCellExperiment'...

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

expData Get data item from an input SingleCellExperiment object. The data item can be an assay, altExp (subset) or a reducedDim, which is retrieved based on the name of the data item.

Description

expData Get data item from an input SingleCellExperiment object. The data item can be an assay, altExp (subset) or a reducedDim, which is retrieved based on the name of the data item.

Usage

## S4 method for signature 'ANY,character'
expData(inSCE, assayName)

Arguments

inSCE	Input SingleCellExperiment object.
assayName	Specify the name of the data item to retrieve.

Value

Specified data item.

Examples

data(scExample, package = "singleCellTK")
mat <- expData(sce, "counts")

compbiomed/singleCellTK documentation built on Feb. 10, 2024, 3:32 a.m.