getPathwayResultNames: List pathway analysis result names

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

List pathway analysis result names

Description

List pathway analysis result names

Usage

getPathwayResultNames(inSCE, stopIfNone = FALSE, verbose = FALSE)

Arguments

inSCE	Input SingleCellExperiment object.
stopIfNone	Whether to stop and raise an error if no results found. If FALSE, will return an empty character vector.
verbose	Show warning if no result found. Default FALSE

Details

Pathway analysis results will be stored as matrices in reducedDims slot of inSCE. This function lists the result names stored in metadata slot when analysis is performed.

Value

A character vector of valid pathway analysis result names.

Examples

data(scExample)
getPathwayResultNames(sce)

compbiomed/singleCellTK documentation built on Feb. 10, 2024, 3:32 a.m.