generateHTANMeta | R Documentation |
Generate HTAN manifest file for droplet and cell count data
generateHTANMeta(
dropletSCE = NULL,
cellSCE = NULL,
samplename,
htan_biospecimen_id,
dir,
dataType = c("Droplet", "Cell", "Both")
)
dropletSCE |
A SingleCellExperiment object containing droplet count matrix data |
cellSCE |
A SingleCellExperiment object containing cell count matrix data |
samplename |
The sample name of the SingleCellExperiment objects |
htan_biospecimen_id |
The HTAN biospecimen id of the sample in SingleCellExperiment object |
dir |
The output directory of the SCTK QC pipeline. |
dataType |
Type of the input data. It can be one of "Droplet", "Cell" or "Both". |
A SingleCellExperiment object which combines all objects in sceList. The colData is merged.
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