Files in compbiomed/singleCellTK
Interactive Analysis of Single Cell RNA-Seq Data

.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/AllClasses.R R/AllGenerics.R R/ComBat_SCE.R R/Downsample.Matrix.R R/GSVA.R R/MAST.R R/MAST_plot_functions.R R/alignSingleCellData.R R/data.R R/getBiomarker.R R/getClusterInputData.R R/getPCA.R R/getTSNE.R R/getset.R R/misc_functions.R R/plotBiomarker.R R/plotPCA.R R/plotTSNE.R R/scDiffEx.R R/singleCellTK.R README.md
data/GSE36552_sce.rda
data/GSE60361_subset_sce.rda
data/GSE66507_sce.rda
data/GSE73121_sce.rda
data/maits_sce.rda
inst/shiny/colourGroupInput.R inst/shiny/helpers.R inst/shiny/server.R inst/shiny/ui.R inst/shiny/ui_01_upload.R inst/shiny/ui_02_filter.R inst/shiny/ui_03_cluster.R inst/shiny/ui_04_batchcorrect.R inst/shiny/ui_05_1_diffex.R inst/shiny/ui_05_2_mast.R inst/shiny/ui_06_pathway.R inst/shiny/ui_07_subsample.R
inst/shiny/www/ajax-loader-bar.gif
inst/shiny/www/bootstrap.min.css
inst/shiny/www/bu_bioinfo_logo.png
inst/shiny/www/bu_logo.PNG
inst/shiny/www/cbm.PNG
inst/shiny/www/footer.html
man/ComBat_SCE.Rd man/Downsample.Rd man/DownsampleCells.Rd man/DownsampleDepth.Rd man/GSE36552_sce.Rd man/GSE60361_subset_sce.Rd man/GSE66507_sce.Rd man/GSE73121_sce.Rd man/GSVA_plot.Rd man/GSVA_sce.Rd man/MAST.Rd man/MASTregression.Rd man/MASTviolin.Rd man/SCtkExperiment-class.Rd man/SCtkExperiment.Rd man/alignSingleCellData.Rd man/calcEffectSizes.Rd man/createSCE.Rd man/differentialPower.Rd man/filterSCData.Rd man/generateSimulatedData.Rd man/getBiomarker.Rd man/getClusterInputData.Rd man/getPCA.Rd man/getTSNE.Rd man/iterateSimulations.Rd man/maits_sce.Rd man/parse_rsubread_logs.Rd man/pca_variances-set.Rd man/pca_variances.Rd man/plotBiomarker.Rd man/plotPCA.Rd man/plotTSNE.Rd man/plot_DiffEx.Rd man/plot_d3DiffEx.Rd man/scDiffEx.Rd man/scDiffEx_anova.Rd man/scDiffEx_deseq.Rd man/scDiffEx_deseq2.Rd man/scDiffEx_limma.Rd man/singleCellTK.Rd man/subDiffEx.Rd man/subDiffEx_anova.Rd man/subDiffEx_ttest.Rd man/summarizeTable.Rd man/thresholdGenes.Rd tests/testthat.R tests/testthat/test_lint.R vignettes/Aligning_and_Quantifying_scRNA-Seq_Data.Rmd vignettes/Processing_and_Visualizing_Data_in_the_SingleCellTK.Rmd vignettes/tab01_Upload.Rmd vignettes/tab02_Data-Summary-and-Filtering.Rmd vignettes/tab03_Dimensionality-Reduction-and-Clustering.Rmd vignettes/tab04_Batch-Correction.Rmd vignettes/tab05_Differential-Expression.Rmd vignettes/tab06_Pathway-Activity-Analysis.Rmd vignettes/tab07_Sample-Size.Rmd
compbiomed/singleCellTK documentation built on Dec. 6, 2017, 3:08 p.m.