View source: R/scanpyFunctions.R
plotScanpyPCAGeneRanking | R Documentation |
plotScanpyPCAGeneRanking
plotScanpyPCAGeneRanking(inSCE, PC_comp = "1,2,3", includeLowest = TRUE)
inSCE |
Input |
PC_comp |
For example, '1,2,3' means [1, 2, 3], first, second, third principal component. |
includeLowest |
Whether to show the variables with both highest and
lowest loadings. Default |
plot object
data(scExample, package = "singleCellTK")
## Not run:
sce <- runScanpyNormalizeData(sce, useAssay = "counts")
sce <- runScanpyFindHVG(sce, useAssay = "scanpyNormData", method = "seurat")
sce <- runScanpyScaleData(sce, useAssay = "scanpyNormData")
sce <- runScanpyPCA(sce, useAssay = "scanpyScaledData")
plotScanpyPCAGeneRanking(sce)
## End(Not run)
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