API for compbiomed/singleCellTK
Interactive Analysis of Single Cell RNA-Seq Data

Global functions
ComBatSCE Man page Source code
DownsampleCells Man page Source code
DownsampleDepth Man page Source code
MAST Man page Source code
MASTregression Man page Source code
MASTviolin Man page Source code
SCtkExperiment Man page Source code
SCtkExperiment-class Man page
alignSingleCellData Man page Source code
batchqc_f.pvalue Source code
calcEffectSizes Man page Source code
convertGeneIDs Man page Source code
createSCE Man page Source code
filterSCData Man page Source code
generateSimulatedData Man page Source code
getBiomarker Man page Source code
getClusterInputData Man page Source code
getPCA Man page Source code
getTSNE Man page Source code
gsvaPlot Man page Source code
gsvaSCE Man page Source code
iterateSimulations Man page Source code
mouseBrainSubsetSCE Man page
parseRsubreadLogs Man page Source code
pcaVariances Man page
pcaVariances,SCtkExperiment-method Man page
pcaVariances<- Man page
pcaVariances<-,SCtkExperiment-method Man page
plotBatchVariance Man page Source code
plotBiomarker Man page Source code
plotDiffEx Man page Source code
plotPCA Man page Source code
plotTSNE Man page Source code
powerCalc Source code
scDiffEx Man page Source code
scDiffExANOVA Man page Source code
scDiffExDESeq2 Man page Source code
scDiffExlimma Man page Source code
singleCellTK Man page Source code
subDiffEx Man page Source code
subDiffExANOVA Man page Source code
subDiffExttest Man page Source code
summarizeTable Man page Source code
testFunctions Source code
thresholdGenes Man page Source code
compbiomed/singleCellTK documentation built on June 23, 2018, 8:44 a.m.