scaterlogNormCounts: scaterlogNormCounts Uses logNormCounts to log normalize input...

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

scaterlogNormCounts Uses logNormCounts to log normalize input data

Description

scaterlogNormCounts Uses logNormCounts to log normalize input data

Usage

scaterlogNormCounts(
  inSCE,
  assayName = "ScaterLogNormCounts",
  useAssay = "counts"
)

Arguments

inSCE	Input SingleCellExperiment object
assayName	New assay name for log normalized data
useAssay	Input assay

Value

inSCE Updated SingleCellExperiment object that contains the new log normalized data

Author(s)

Irzam Sarfraz

Examples

data(sce_chcl, package = "scds")
sce_chcl <- scaterlogNormCounts(sce_chcl,"logcounts", "counts")

compbiomed/singleCellTK documentation built on Feb. 10, 2024, 3:32 a.m.