convertSeuratToSCE: convertSeuratToSCE Converts the input seurat object to a sce...

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

convertSeuratToSCE Converts the input seurat object to a sce object

Description

convertSeuratToSCE Converts the input seurat object to a sce object

Usage

convertSeuratToSCE(
  seuratObject,
  normAssayName = "seuratNormData",
  scaledAssayName = "seuratScaledData"
)

Arguments

seuratObject	Input Seurat object
normAssayName	Name of assay to store the normalized data. Default "seuratNormData".
scaledAssayName	Name of assay to store the scaled data. Default "seuratScaledData".

Value

SingleCellExperiment output object

Examples

data(scExample, package = "singleCellTK")
seurat <- convertSCEToSeurat(sce)
sce <- convertSeuratToSCE(seurat)

compbiomed/singleCellTK documentation built on Oct. 27, 2024, 3:26 a.m.