listSampleSummaryStatsTables: Lists the table of SCTK QC outputs stored within the...
In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
listSampleSummaryStatsTables R Documentation
Lists the table of SCTK QC outputs stored within the metadata.
Description
Returns a character vector of the tables
within the metadata slot of the SingleCellExperiment object.
Usage
listSampleSummaryStatsTables(inSCE, ...)
## S4 method for signature 'SingleCellExperiment'
listSampleSummaryStatsTables(inSCE, ...)
Arguments
inSCE
Input SingleCellExperiment object with saved
table within the metadata data. Required.
...
Other arguments passed to the function.
Value
A character vector. Contains a list of summary tables
within the SingleCellExperiment object.
Examples
data(scExample, package = "singleCellTK")
sce <- subsetSCECols(sce, colData = "type != 'EmptyDroplet'")
sce <- sampleSummaryStats(sce, simple = TRUE, statsName = "qc_table")
listSampleSummaryStatsTables(sce)
compbiomed/singleCellTK documentation built on Feb. 10, 2024, 3:32 a.m.
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| listSampleSummaryStatsTables | R Documentation |
Lists the table of SCTK QC outputs stored within the metadata.
Description
Returns a character vector of the tables within the metadata slot of the SingleCellExperiment object.
Usage
listSampleSummaryStatsTables(inSCE, ...)
## S4 method for signature 'SingleCellExperiment'
listSampleSummaryStatsTables(inSCE, ...)
Arguments
inSCE |
Input SingleCellExperiment object with saved table within the metadata data. Required. |
... |
Other arguments passed to the function. |
Value
A character vector. Contains a list of summary tables within the SingleCellExperiment object.
Examples
data(scExample, package = "singleCellTK")
sce <- subsetSCECols(sce, colData = "type != 'EmptyDroplet'")
sce <- sampleSummaryStats(sce, simple = TRUE, statsName = "qc_table")
listSampleSummaryStatsTables(sce)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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