singleCellTK: Run the single cell analysis app

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Run the single cell analysis app

Description

Use this function to run the single cell analysis app.

Usage

singleCellTK(inSCE = NULL, includeVersion = TRUE, theme = "yeti")

Arguments

inSCE	Input SingleCellExperiment object.
includeVersion	Include the version number in the SCTK header. The default is TRUE.
theme	The bootswatch theme to use for the singleCellTK UI. The default is 'flatly'.

Value

The shiny app will open

Examples

## Not run: 
#Upload data through the app
singleCellTK()

# Load the app with a SingleCellExperiment object
data("mouseBrainSubsetSCE")
singleCellTK(mouseBrainSubsetSCE)

## End(Not run)

compbiomed/singleCellTK documentation built on Feb. 10, 2024, 3:32 a.m.