plotBarcodeRankDropsResults: Plots for runBarcodeRankDrops outputs.

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Plots for runBarcodeRankDrops outputs.

Description

A wrapper function which visualizes outputs from the runBarcodeRankDrops function stored in the metadata slot of the SingleCellExperiment object.

Usage

plotBarcodeRankDropsResults(
  inSCE,
  sample = NULL,
  defaultTheme = TRUE,
  dotSize = 0.5,
  titleSize = 18,
  axisSize = 15,
  axisLabelSize = 18,
  legendSize = 15
)

Arguments

inSCE	Input SingleCellExperiment object with saved dimension reduction components or a variable with saved results from runBarcodeRankDrops. Required.
sample	Character vector or colData variable name. Indicates which sample each cell belongs to. Default NULL.
defaultTheme	Removes grid in plot and sets axis title size to 10 when TRUE. Default TRUE.
dotSize	Size of dots. Default 0.5.
titleSize	Size of title of plot. Default 18.
axisSize	Size of x/y-axis ticks. Default 15.
axisLabelSize	Size of x/y-axis labels. Default 18.
legendSize	size of legend. Default 15.

Value

list of .ggplot objects

Examples

data(scExample, package = "singleCellTK")
sce <- runBarcodeRankDrops(inSCE = sce)
plotBarcodeRankDropsResults(inSCE = sce)

compbiomed/singleCellTK documentation built on Oct. 27, 2024, 3:26 a.m.