plotSeuratHVG: plotSeuratHVG Plot highly variable genes from input sce...

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

plotSeuratHVG Plot highly variable genes from input sce object (must have highly variable genes computations stored)

Description

plotSeuratHVG Plot highly variable genes from input sce object (must have highly variable genes computations stored)

Usage

plotSeuratHVG(inSCE, labelPoints = 0)

Arguments

inSCE	(sce) object that contains the highly variable genes computations
labelPoints	Numeric value indicating the number of top genes that should be labeled. Default is 0, which will not label any point.

Value

plot object

Examples

data(scExample, package = "singleCellTK")
## Not run: 
sce <- runSeuratNormalizeData(sce, useAssay = "counts")
sce <- runSeuratFindHVG(sce, useAssay = "counts")
plotSeuratHVG(sce)

## End(Not run)

compbiomed/singleCellTK documentation built on Feb. 10, 2024, 3:32 a.m.