msigdb_table: MSigDB gene get Category table
In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
msigdb_table R Documentation
MSigDB gene get Category table
Description
A table of gene set categories that can be download from MSigDB. The
categories and descriptions can be found here:
https://www.gsea-msigdb.org/gsea/msigdb/collections.jsp. The IDs in the
first column can be used to retrieve the gene sets for these categories
using the importGeneSetsFromMSigDB function.
Usage
data("msigdb_table")
Format
A data.frame.
Value
A table of gene set categories
Examples
data("msigdb_table")
compbiomed/singleCellTK documentation built on Feb. 10, 2024, 3:32 a.m.
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| msigdb_table | R Documentation |
MSigDB gene get Category table
Description
A table of gene set categories that can be download from MSigDB. The categories and descriptions can be found here: https://www.gsea-msigdb.org/gsea/msigdb/collections.jsp. The IDs in the first column can be used to retrieve the gene sets for these categories using the importGeneSetsFromMSigDB function.
Usage
data("msigdb_table")
Format
A data.frame.
Value
A table of gene set categories
Examples
data("msigdb_table")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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