plotDimRed | R Documentation |
Plot dimensionality reduction from computed metrics including PCA, ICA, tSNE and UMAP
plotDimRed(
inSCE,
useReduction = "PCA",
showLegend = FALSE,
xDim = 1,
yDim = 2,
xAxisLabel = NULL,
yAxisLabel = NULL
)
inSCE |
Input SCE object |
useReduction |
Reduction to plot. Default is |
showLegend |
If legends should be plotted or not |
xDim |
Numeric value indicating the dimension to use for X-axis. Default is 1 (refers to PC1). |
yDim |
Numeric value indicating the dimension to use for Y-axis. Default is 2 (refers to PC2). |
xAxisLabel |
Specify the label for x-axis. Default is |
yAxisLabel |
Specify the label for y-axis. Default is |
plot object
data("mouseBrainSubsetSCE", package = "singleCellTK")
plotDimRed(mouseBrainSubsetSCE, "PCA_logcounts")
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