trimCounts: Trim Counts

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Trim Counts

Description

Trims an input count matrix such that each value greater than a threshold value and each value less than a provided lower threshold value is trimmed to the lower treshold value.

Usage

trimCounts(counts, trimValue = c(10, -10))

Arguments

counts	matrix
trimValue	where trimValue[1] for upper threshold and trimValue[2] as lower threshold. Default is c(10,-10)

Value

trimmed counts matrix

Examples

data(sce_chcl, package = "scds")
assay(sce_chcl, "countsTrimmed") <- trimCounts(assay(sce_chcl, "counts"),
                                               c(10, -10))

compbiomed/singleCellTK documentation built on Feb. 10, 2024, 3:32 a.m.