runSeuratSCTransform: runSeuratSCTransform Runs the SCTransform function to...

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

runSeuratSCTransform Runs the SCTransform function to transform/normalize the input data

Description

runSeuratSCTransform Runs the SCTransform function to transform/normalize the input data

Usage

runSeuratSCTransform(
  inSCE,
  normAssayName = "SCTCounts",
  useAssay = "counts",
  verbose = TRUE
)

Arguments

inSCE	Input SingleCellExperiment object
normAssayName	Name for the output data assay. Default "SCTCounts".
useAssay	Name for the input data assay. Default "counts".
verbose	Logical value indicating if informative messages should be displayed. Default is TRUE.

Value

Updated SingleCellExperiment object containing the transformed data

Examples

data("mouseBrainSubsetSCE", package = "singleCellTK")
mouseBrainSubsetSCE <- runSeuratSCTransform(mouseBrainSubsetSCE)

compbiomed/singleCellTK documentation built on Feb. 10, 2024, 3:32 a.m.