setSCTKDisplayRow: Indicates which rowData to use for visualization

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Indicates which rowData to use for visualization

Description

This function is to be used to specify which

Usage

setSCTKDisplayRow(inSCE, featureDisplayRow)

Arguments

inSCE	Input SingleCellExperiment object with saved dimension reduction components or a variable with saved results. Required.
featureDisplayRow	Indicates which column name of rowData to be used for plots.

Value

A SingleCellExperiment object with the specific column name of rowData to be used for plotting stored in metadata.

Examples

data(scExample, package="singleCellTK")
sce <- subsetSCECols(sce, colData = "type != 'EmptyDroplet'")
sce <- setSCTKDisplayRow(inSCE = sce, featureDisplayRow = "feature_name")
plotSCEViolinAssayData(inSCE = sce, feature = "ENSG00000019582")

compbiomed/singleCellTK documentation built on Feb. 10, 2024, 3:32 a.m.