View source: R/seuratFunctions.R
runSeuratScaleData | R Documentation |
runSeuratScaleData Scales the input sce object according to the input parameters
runSeuratScaleData(
inSCE,
useAssay = "seuratNormData",
scaledAssayName = "seuratScaledData",
model = "linear",
scale = TRUE,
center = TRUE,
scaleMax = 10,
verbose = TRUE
)
inSCE |
(sce) object to scale |
useAssay |
Assay containing normalized counts to scale. |
scaledAssayName |
Name of new assay containing scaled data. Default
|
model |
selected model to use for scaling data. Default |
scale |
boolean if data should be scaled or not. Default |
center |
boolean if data should be centered or not. Default |
scaleMax |
maximum numeric value to return for scaled data. Default
|
verbose |
Logical value indicating if informative messages should
be displayed. Default is |
Scaled SingleCellExperiment
object
data(scExample, package = "singleCellTK")
## Not run:
sce <- runSeuratNormalizeData(sce, useAssay = "counts")
sce <- runSeuratFindHVG(sce, useAssay = "counts")
sce <- runSeuratScaleData(sce, useAssay = "counts")
## End(Not run)
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