scaterCPM: scaterCPM Uses CPM from scater library to compute...
In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
scaterCPM R Documentation
scaterCPM
Uses CPM from scater library to compute counts-per-million.
Description
scaterCPM
Uses CPM from scater library to compute counts-per-million.
Usage
scaterCPM(inSCE, assayName = "ScaterCPMCounts", useAssay = "counts")
Arguments
inSCE
Input SingleCellExperiment object
assayName
New assay name for cpm data.
useAssay
Input assay
Value
inSCE Updated SingleCellExperiment object
Author(s)
Irzam Sarfraz
Examples
data(sce_chcl, package = "scds")
sce_chcl <- scaterCPM(sce_chcl,"countsCPM", "counts")
compbiomed/singleCellTK documentation built on Feb. 10, 2024, 3:32 a.m.
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| scaterCPM | R Documentation |
scaterCPM Uses CPM from scater library to compute counts-per-million.
Description
scaterCPM Uses CPM from scater library to compute counts-per-million.
Usage
scaterCPM(inSCE, assayName = "ScaterCPMCounts", useAssay = "counts")
Arguments
inSCE |
Input SingleCellExperiment object |
assayName |
New assay name for cpm data. |
useAssay |
Input assay |
Value
inSCE Updated SingleCellExperiment object
Author(s)
Irzam Sarfraz
Examples
data(sce_chcl, package = "scds")
sce_chcl <- scaterCPM(sce_chcl,"countsCPM", "counts")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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