sceBatches: Example Single Cell RNA-Seq data in SingleCellExperiment...

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Example Single Cell RNA-Seq data in SingleCellExperiment object, with different batches annotated

Description

Two batches of pancreas scRNAseq dataset are combined with their original counts. Cell types and batches are annotated in 'colData(sceBatches)'. Two batches came from Wang, et al., 2016, annotated as ''w''; and Xin, et al., 2016, annotated as ''x'‘. Two common cell types, '’alpha'' and ''beta'', that could be found in both original studies with relatively large population were kept for cleaner demonstration.

Usage

data('sceBatches')

Format

An object of class SingleCellExperiment with 100 rows and 250 columns.

Value

Example Single Cell RNA-Seq data in SingleCellExperiment object, with different batches annotated

compbiomed/singleCellTK documentation built on Feb. 10, 2024, 3:32 a.m.