inst/shiny/qc_help_pages/ui_dc_and_qcm_help.R

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

doubletCellsHelpModal <- function() {
  modalDialog(
    tags$style(HTML("
      div {
        word-wrap: break-word;
      }
      ")),
    tags$div(
      h3("Doublet Cells Parameters"),
      fluidRow(
        column(4, tags$b("Parameter Name")),
        column(8, tags$b("Description"))
      ),
      tags$hr(),
      fluidRow(
        column(4, "nNeighbors"),
        column(8, "Number of nearest neighbors used to calculate density for doublet detection. Default 50.")
      ),
      tags$hr(),
      fluidRow(
        column(4, "simDoublets"),
        column(8, 'Number of simulated doublets created for doublet detection. Default 10000.')
      ),
    )
  )
}

QCMHelpModal <- function() {
  modalDialog(
    tags$style(HTML("
      div {
        word-wrap: break-word;
      }
      ")),
    tags$div(
      h3("QC Metrics Parameters"),
      fluidRow(
        column(4, tags$b("Parameter Name")),
        column(8, tags$b("Description"))
      ),
      tags$hr(),
      fluidRow(
        column(4, "collectionName"),
        column(8, "Character. Name of a GeneSetCollection obtained by using one of the importGeneSet* functions. Preset options for mitochondrial gene sets are provided, but users have to choose the one that matches to the dataset if needed. Default None.")
      ),
      tags$hr(),
      fluidRow(
        column(4, "Import Gene Sets"),
        column(8, "Redirect link to Import Gene Sets page, where users can upload GMT files, import gene set from curated database, or paste in a customized list.")
      )
    )
  )
}