In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

require(singleCellTK)
require(ggplot2)

sce.qc<- params$object

    plotScDblFinder<- plotScDblFinderResults(inSCE = sce.qc, reducedDimName = "UMAP")
    i="ScDblFinder"
    cat(paste0('# ', i, ' {.tabset} \n\n'))
    cat(paste0('## Scatter Score \n\n'))
    plotScDblFinder$scatter_doubletScore

    cat(paste0('## Density Score \n\n'))
    plotScDblFinder$density_doubletScore

    cat(paste0('## Violin Score \n\n'))
    plotScDblFinder$violin_doubletScore

    cat(paste0('## Session info \n\n'))
    sce.qc@metadata$runScDblFinder

description_scDblFinder<- descriptionScDblFinder()

{.unlisted .unnumbered .toc-ignore}

r description_scDblFinder

compbiomed/singleCellTK documentation built on May 8, 2024, 6:58 p.m.