require(singleCellTK) require(ggplot2)
sce.qc<- params$object
plotCxds<- plotCxdsResults(sce.qc, reducedDimName = "UMAP") i="Cxds" cat(paste0('# ', i, ' {.tabset} \n\n')) cat(paste0('## Scatter Score \n\n')) plotCxds$scatterScore cat(paste0('## Density Score \n\n')) plotCxds$densityScore cat(paste0('## Violin Score \n\n')) plotCxds$violinScore cat(paste0('## Session info \n\n')) sce.qc@metadata$runCxds
description_CxdsResults<- descriptionCXDS()
r description_CxdsResults
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