Files in connorhknight/IBRAP
Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)

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R/IBRAP-object.R R/Read10X_output.R R/add.cell.cycle.R R/add.feature.score.R R/as.csc.matrix.R R/as_matrix.R R/as_matrix_transpose.R R/aslist.R R/benchmark.clustering.R R/benchmark.intergation.R R/bracketsubset.R R/bracketsubset_replace.R R/cell_metadata.R R/colnames.R R/convert_subset_index.R R/createIBRAPobject.R R/df_to_dgCMatrix.R R/dim.R R/dollarsubset.R R/feature_metadata.R R/fetchResults.R R/filter_IBRAP.R R/find_neighbours.R R/find_percentage_genes.R R/integrate.cluster.benchmarking.results.R R/isUnique.R R/merge.R R/methods-object.R R/ncol_methods_method.R R/nrow_methods_method.R R/perform.GO.enrichment.R R/perform.bbknn.R R/perform.celltalker.R R/perform.decontX.R R/perform.diffusion.map.R R/perform.gsea.R R/perform.harmony.R R/perform.lvish.R R/perform.pca.R R/perform.reduction.kmeans.R R/perform.sc3.reduction.cluster.R R/perform.sc3.slot.cluster.R R/perform.scanorama.R R/perform.scanpy.normalisation.R R/perform.scran.normalisation.R R/perform.scrublet.R R/perform.sct.normalisation.R R/perform.sctype.R R/perform.seurat.cluster.R R/perform.seurat.diffexp.R R/perform.seurat.diffexp.all.R R/perform.seurat.subclustering.R R/perform.singleR.annotation.R R/perform.slingshot.trajectory.R R/perform.tpm.normalisation.R R/perform.tsne.R R/perform.umap.R R/plot.GO.output.R R/plot.QC.scatter.R R/plot.QC.vln.R R/plot.cluster.benchmarking.R R/plot.dot.plot.R R/plot.features.R R/plot.integration.benchmarking.R R/plot.reduced.dim.R R/plot.reduced.dim.interactive.R R/plot.slingshot.R R/plot.variance.R R/plot.vln.R R/prepare.for.dittoSeq.R R/prepare.reticulate.R R/remove.hvgs.R R/replaceResults.R R/rownames.R R/run.IBRAP.rshiny.R R/seurat_integration.R R/show.R R/showObjectContents.R R/singelbracketsubset.R R/splitIBRAP.R

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data.R

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index.md

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connorhknight/IBRAP documentation built on March 9, 2023, 7:01 p.m.

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connorhknight/IBRAP
Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)

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Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)

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connorhknight/IBRAP Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)

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Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)

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Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)