GetChannelsAndMarkers: Extract channel and marker names from a collection of FCS...

In davnovak/SingleBench: Framework for benchmarking and optimising dimension-reduction and clustering pipelines in expression data analysis

Description

For a collection of FCS files from one experiment (same panel), this function extracts names of channels and markers associated with them, as well as identifying possible mismatches or unmatched parameters that are not present in all files.

Usage

GetChannelsAndMarkers(fcs_paths, verbose = TRUE)

Arguments

fcs_paths	string vector: paths to FCS files
verbose	logical value: whether progress messages should be printed during execution

Value

list with slots markers, channels, pairs (string representation of how markers and channels are matched) and idcs.mismatches (which parameters are mismatched across the different files).

davnovak/SingleBench documentation built on Dec. 19, 2021, 9:10 p.m.