ScoreAnnotation: Apply unsupervised evaluation metrics to score manual...

In davnovak/SingleBench: Framework for benchmarking and optimising dimension-reduction and clustering pipelines in expression data analysis

Description

Apply unsupervised evaluation metrics to score manual annotation of data

Usage

ScoreAnnotation(exprs, annotation, unassigned_labels = c())

Arguments

exprs	numeric matrix: expression data, with measured markers in columns and events in rows
annotation	factor vector: manual labels per row of exprs. Can be extracted via GetAnnotation(benchmark, concatenate = TRUE)
unassigned_labels	character vector: names of label(s) given to cells that are left as unassigned by the annotation strategy. Default value is c() (empty vector)

davnovak/SingleBench documentation built on Dec. 19, 2021, 9:10 p.m.